CellRank 2: A Unified Framework for Single-Cell Fate Mapping
CellRank 2: Revolutionizing Single-Cell Trajectory Analysis
Bioinformatics
[scRNA-seq] ssGSEA with escape R package in Seurat v3 and later versions - troubleshooting
The most recent version of Seurat is v5.1.0
[scRNA-seq] GeneTrajectory: unraveling gene expression dynamics for single-cell analysis
In a recent study published in Nature Biotechnology, Qu et al. introduce GeneTrajectory, a novel computational method for analyzing single-cell RNA sequencin...
[scRNA-seq] Introducing ddqc (data-driven quality control) for effective Quality Control
ddqc is a method proposed in the paper published in Genome Biology for performing quality control (QC) on scRNA-seq data in a way that accounts for biologica...
[scRNA-seq] Barnyard (multi-species) scRNA-seq with 10X Chromium: classifying species-specific barcode reads
I am currently conducting research with patient-derived xenograft (PDX). (host = mouse, graft = human)